EnhancerDB
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  3. rs28501478[chr6:47210921]
Enhancers that have rs28501478[chr6:47210921]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 47202205 47219001 enh9147
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs28501478[chr6:47210921]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 47210905 47210923 RARA JASPAR yes 102014383
chr6 47210906 47210921 HNF1A JASPAR yes 102014384
chr6 47210908 47210923 HNF4A JASPAR yes 102014386
chr6 47210909 47210923 NR2F1 JASPAR yes 102014388
chr6 47210909 47210923 RXRB JASPAR yes 102014389
chr6 47210909 47210923 RXRG JASPAR yes 102014390
chr6 47210909 47210924 HNF4G JASPAR yes 102014391
chr6 47210909 47210924 LEF1 JASPAR yes 102014392
chr6 47210909 47210924 NR2C2 JASPAR yes 102014393
chr6 47210912 47210921 Tf-LF1 TRANSFAC yes 102014394
chr6 47210912 47210925 NR2F1 JASPAR yes 102014395
chr6 47210914 47210925 ESRRB JASPAR yes 102014396
chr6 47210915 47210923 NR4A2 JASPAR yes 102014397
chr6 47210916 47210926 RORA JASPAR yes 102014398
chr6 47210916 47210930 NR2F1 JASPAR yes 102014399
Genes associated with rs28501478[chr6:47210921], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More