EnhancerDB
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  3. rs28502829[chr17:55539429]
Enhancers that have rs28502829[chr17:55539429]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 55530146 55569915 enh4488
Bone Marrow (K562) Astrocyte Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs28502829[chr17:55539429]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 55539307 55541179 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21773526
chr17 55539307 55541179 POLR2A UCSC Txn Factor no Conserved 108274069
chr17 55539307 55541179 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108274070
chr17 55539425 55539443 ESR2 JASPAR yes 54957267
chr17 55539426 55539441 AR JASPAR yes 54957268
chr17 55539426 55539443 NR3C1 JASPAR yes 54957269
chr17 55539426 55539443 NR3C2 JASPAR yes 54957270
chr17 55539426 55539444 ESR2 JASPAR yes 54957271
chr17 55539426 55539444 NR3C1 JASPAR yes 54957272
chr17 55539427 55539447 ESR1 JASPAR yes 54957273
chr17 55539428 55539443 AR JASPAR yes 54957274
Genes associated with rs28502829[chr17:55539429], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More