EnhancerDB
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  3. rs28509465[chr1:235132849]
Enhancers that have rs28509465[chr1:235132849]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235130325 235168235 enh997
Bone Marrow (K562) Liver Astrocyte Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs28509465[chr1:235132849]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235132676 235133137 SOX2 GTRD no Neural Stem Cells (H9) 21402816
chr1 235132676 235133137 SOX2 GTRD no Neural Stem Cells (H9) 107885441
chr1 235132825 235133421 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21402817
chr1 235132825 235133421 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 107885442
chr1 235132825 235133439 TCF7L2 UCSC Txn Factor no Conserved 107885443
chr1 235132832 235133492 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21402818
chr1 235132832 235133492 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107885444
chr1 235132835 235132856 MAFG JASPAR yes 36339960
chr1 235132839 235132850 NFE2L2 JASPAR yes 36339961
Genes associated with rs28509465[chr1:235132849], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More