EnhancerDB
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  3. rs28562962[chr1:235142021]
Enhancers that have rs28562962[chr1:235142021]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235130325 235168235 enh997
Bone Marrow (K562) Liver Astrocyte Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs28562962[chr1:235142021]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235141970 235142566 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402926
chr1 235141972 235142632 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402927
chr1 235141995 235142511 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402928
chr1 235142015 235142024 NKX2-8 JASPAR yes 36341311
chr1 235142019 235142539 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402929
Genes associated with rs28562962[chr1:235142021], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More