EnhancerDB
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  3. rs28588221[chr1:235148098]
Enhancers that have rs28588221[chr1:235148098]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235130325 235168235 enh997
Bone Marrow (K562) Liver Astrocyte Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs28588221[chr1:235148098]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235146383 235149741 POLR2A UCSC Txn Factor no Conserved 107885561
chr1 235146512 235148199 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402973
chr1 235146512 235148199 RUNX3 UCSC Txn Factor no Conserved 107885562
chr1 235146512 235148199 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885563
chr1 235146566 235148196 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402974
chr1 235146566 235148196 NFIC UCSC Txn Factor no Conserved 107885564
chr1 235146566 235148196 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885565
chr1 235146795 235149741 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402975
chr1 235146795 235149741 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885567
chr1 235146959 235148251 ZNF274 GTRD no Blood (GM12878) 21402988
chr1 235146959 235148251 ZNF274 GTRD no Blood (GM12878) 107885581
chr1 235147085 235148171 ZNF274 GTRD no Blood (GM12878) 21402994
chr1 235147085 235148171 ZNF274 GTRD no Blood (GM12878) 107885587
chr1 235147125 235148102 ZNF274 GTRD no Blood (GM12878) 21402996
chr1 235147357 235148216 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403020
chr1 235147495 235148145 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21403048
chr1 235147533 235148123 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403062
chr1 235147535 235148195 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21403063
chr1 235147599 235148109 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21403075
chr1 235147658 235148098 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21403085
chr1 235147741 235148177 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403098
chr1 235147753 235148133 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403100
chr1 235147773 235148273 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403103
chr1 235147789 235148125 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403105
chr1 235147790 235148190 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403106
chr1 235147793 235148177 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21403107
chr1 235147809 235148169 ZNF274 GTRD no Blood (GM12878) 21403108
chr1 235147824 235148247 ZNF274 GTRD no Blood (GM12878) 21403109
chr1 235147825 235148149 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403110
chr1 235147855 235148175 ZNF274 GTRD no Blood (GM12878) 21403111
chr1 235147897 235148147 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21403114
chr1 235148094 235148109 PRDM1 JASPAR yes 36342132
Genes associated with rs28588221[chr1:235148098], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More