EnhancerDB
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  3. rs28681209[chr17:80488341]
Enhancers that have rs28681209[chr17:80488341]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 80480565 80515355 enh4649
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs28681209[chr17:80488341]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 80488320 80488341 IRF1 JASPAR yes 56370807
chr17 80488321 80488342 IRF1 JASPAR yes 56370809
chr17 80488322 80488343 IRF1 JASPAR yes 56370811
chr17 80488323 80488344 IRF1 JASPAR yes 56370813
chr17 80488324 80488345 IRF1 JASPAR yes 56370815
chr17 80488325 80488346 IRF1 JASPAR yes 56370817
chr17 80488326 80488341 FOXP1 JASPAR yes 56370818
chr17 80488326 80488347 IRF1 JASPAR yes 56370819
chr17 80488327 80488342 FOXP1 JASPAR yes 56370820
chr17 80488327 80488348 IRF1 JASPAR yes 56370821
chr17 80488328 80488343 FOXP1 JASPAR yes 56370822
chr17 80488329 80488350 IRF1 JASPAR yes 56370823
chr17 80488330 80488345 FOXP1 JASPAR yes 56370824
chr17 80488331 80488346 STAT2 JASPAR yes 56370825
chr17 80488331 80488352 IRF1 JASPAR yes 56370826
chr17 80488332 80488347 FOXP1 JASPAR yes 56370827
chr17 80488333 80488354 IRF1 JASPAR yes 56370828
chr17 80488337 80488352 PRDM1 JASPAR yes 56370829
chr17 80488337 80488358 IRF1 JASPAR yes 56370830
Genes associated with rs28681209[chr17:80488341], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More