EnhancerDB
  1. Home
  2. SNP
  3. rs2971988[chr1:41871233]
Enhancers that have rs2971988[chr1:41871233]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 41849805 41888800 enh11788
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs2971988[chr1:41871233]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 41871218 41871233 PRDM1 JASPAR yes 28386090
chr1 41871221 41871234 SMAD2 JASPAR yes 28386091
Genes associated with rs2971988[chr1:41871233], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More