EnhancerDB
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  3. rs2993542[chr1:212109560]
Enhancers that have rs2993542[chr1:212109560]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 212081505 212111174 enh12636
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Pancreas Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs2993542[chr1:212109560]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 212107063 212111534 ZNF274 GTRD no Bone Marrow (K562) 21377721
chr1 212109103 212109923 P63 GTRD no Skin (Keratinocyte) 21377778
chr1 212109104 212109994 P63 GTRD no Skin (Keratinocyte) 21377779
chr1 212109128 212109937 P63 GTRD no Skin (Keratinocyte) 21377780
chr1 212109185 212109922 P63 GTRD no Skin (Keratinocyte) 21377781
chr1 212109507 212110192 ZNF274 GTRD no Bone Marrow (K562) 21377782
chr1 212109557 212109572 MEF2A JASPAR yes 35093788
chr1 212109558 212109573 MEF2C JASPAR yes 35093789
chr1 212109559 212109571 MEF2A JASPAR yes 35093790
chr1 212109559 212109571 MEF2B JASPAR yes 35093791
chr1 212109559 212109571 MEF2D JASPAR yes 35093792
chr1 212109560 212109570 MEF2A JASPAR yes 35093793
Genes associated with rs2993542[chr1:212109560], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More