EnhancerDB
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  3. rs3009958[chr1:234879890]
Enhancers that have rs3009958[chr1:234879890]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 234877045 234913055 enh12796
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs3009958[chr1:234879890]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 234873111 234880291 ZNF274 GTRD no Bone Marrow (K562) 21397133
chr1 234873111 234880291 ZNF274 GTRD no Bone Marrow (K562) 21397134
chr1 234878419 234883607 ZNF274 GTRD no Blood (GM12878) 107881636
chr1 234878974 234883568 ZNF274 GTRD no Blood (GM12878) 107881637
chr1 234878977 234880078 ZNF274 GTRD no Liver (HepG2) 21397472
chr1 234878982 234883403 ZNF274 GTRD no Blood (GM12878) 107881638
chr1 234879031 234880068 ZNF274 GTRD no Bone Marrow (K562) 21397474
chr1 234879051 234880925 ZNF274 GTRD no Bone Marrow (K562) 21397475
chr1 234879175 234879984 ZNF274 GTRD no Bone Marrow (K562) 21397477
chr1 234879312 234880153 ZNF274 GTRD no Bone Marrow (K562) 21397479
chr1 234879580 234880176 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21397481
chr1 234879883 234879898 SOX21 JASPAR yes 36310141
chr1 234879883 234879899 SOX4 JASPAR yes 36310142
chr1 234879890 234879905 FOXA1 JASPAR yes 36310143
Genes associated with rs3009958[chr1:234879890], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More