EnhancerDB
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  3. rs34148489[chr16:85258439]
Enhancers that have rs34148489[chr16:85258439]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85219145 85290912 enh16864
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs34148489[chr16:85258439]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85257855 85259434 ZNF143 GTRD no Epithelial (MCF-7) 21721558
chr16 85257967 85260329 TCF7L2 GTRD no Colon (HCT116) 21721559
chr16 85257969 85258965 ZNF143 GTRD no Epithelial (MCF-7) 21721560
chr16 85257974 85258707 ZNF274 GTRD no Bone Marrow (K562) 21721561
chr16 85258061 85259016 ZNF143 GTRD no Epithelial (MCF-7) 21721562
chr16 85258105 85260305 TCF7L2 GTRD no Colon (HCT116) 21721563
chr16 85258107 85260265 TCF7L2 GTRD no Colon (HCT116) 21721564
chr16 85258143 85260208 TCF7L2 GTRD no Colon (HCT116) 21721565
chr16 85258234 85260260 TCF7L2 GTRD no Colon (HCT116) 21721566
chr16 85258422 85259351 ZNF274 GTRD no Bone Marrow (K562) 21721567
chr16 85258426 85258441 MEF2C JASPAR yes 12035044
chr16 85258427 85258442 MEF2A JASPAR yes 12035045
chr16 85258428 85258440 MEF2A JASPAR yes 12035046
chr16 85258428 85258440 MEF2B JASPAR yes 12035047
chr16 85258428 85258440 MEF2D JASPAR yes 12035048
chr16 85258434 85258449 MEF2C JASPAR yes 12035049
chr16 85258434 85258455 IRF1 JASPAR yes 12035050
chr16 85258435 85258450 FOXP1 JASPAR yes 12035051
chr16 85258435 85258456 IRF1 JASPAR yes 12035052
chr16 85258436 85258451 FOXP1 JASPAR yes 12035053
chr16 85258436 85259556 TCF7L2 GTRD no Colon (HCT116) 21721568
chr16 85258437 85258452 FOXP1 JASPAR yes 12035054
chr16 85258438 85258453 FOXP1 JASPAR yes 12035055
chr16 85258439 85258454 FOXP1 JASPAR yes 12035056
chr16 85258439 85258460 IRF1 JASPAR yes 12035057
Genes associated with rs34148489[chr16:85258439], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More