EnhancerDB
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  3. rs34478341[chr1:154390212]
Enhancers that have rs34478341[chr1:154390212]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 154376585 154406743 enh12276
Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs34478341[chr1:154390212]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 154390206 154390227 IRF1 JASPAR yes 32290124
chr1 154390207 154390228 IRF1 JASPAR yes 32290125
chr1 154390209 154390230 IRF1 JASPAR yes 32290126
chr1 154390210 154390231 IRF1 JASPAR yes 32290127
chr1 154390211 154390226 FOXP1 JASPAR yes 32290128
chr1 154390211 154390232 IRF1 JASPAR yes 32290129
chr1 154390212 154390227 FOXP1 JASPAR yes 32290130
chr1 154390212 154390233 IRF1 JASPAR yes 32290131
Genes associated with rs34478341[chr1:154390212], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More