EnhancerDB
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  3. rs34553579[chr1:19779378]
Enhancers that have rs34553579[chr1:19779378]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs34553579[chr1:19779378]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19779364 19779378 TLX1 JASPAR yes 27192381
chr1 19779364 19779382 ESR2 JASPAR yes 27192382
chr1 19779365 19779382 ESR1 JASPAR yes 27192383
Genes associated with rs34553579[chr1:19779378], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More