EnhancerDB
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  3. rs368515526[chr12:53955808]
Enhancers that have rs368515526[chr12:53955808]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 53952154 53966435 enh2368
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Colon (HCT116) Uterus Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Heart
Transcript factors that have rs368515526[chr12:53955808]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 53954615 53955949 TCF7L2 GTRD no Colon (HCT116) 21549439
chr12 53954615 53955949 TCF7L2 GTRD no Colon (HCT116) 108036194
chr12 53954676 53955824 ZNF143 GTRD no Epithelial (MCF-7) 21549440
chr12 53954676 53955824 ZNF143 GTRD no Epithelial (MCF-7) 108036195
chr12 53954900 53955903 TCF7L2 GTRD no Colon (HCT116) 21549442
chr12 53954900 53955903 TCF7L2 GTRD no Colon (HCT116) 108036197
chr12 53955263 53955919 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036203
chr12 53955283 53955823 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036204
chr12 53955285 53955881 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21549447
chr12 53955285 53955881 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 108036205
chr12 53955289 53955865 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036206
chr12 53955312 53955816 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036207
chr12 53955316 53955856 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036208
chr12 53955327 53955847 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036209
chr12 53955328 53955812 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036210
chr12 53955445 53955815 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108036232
chr12 53955804 53955808 YY1 TRANSFAC yes 120991049
Genes associated with rs368515526[chr12:53955808], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More