EnhancerDB
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  3. rs368611789[chr12:53955277]
Enhancers that have rs368611789[chr12:53955277]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 53952154 53966435 enh2368
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Colon (HCT116) Uterus Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Heart
Transcript factors that have rs368611789[chr12:53955277]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 53954615 53955949 TCF7L2 GTRD no Colon (HCT116) 21549439
chr12 53954615 53955949 TCF7L2 GTRD no Colon (HCT116) 108036194
chr12 53954676 53955824 ZNF143 GTRD no Epithelial (MCF-7) 21549440
chr12 53954676 53955824 ZNF143 GTRD no Epithelial (MCF-7) 108036195
chr12 53954690 53955642 ZNF143 GTRD no Epithelial (MCF-7) 21549441
chr12 53954690 53955642 ZNF143 GTRD no Epithelial (MCF-7) 108036196
chr12 53954900 53955903 TCF7L2 GTRD no Colon (HCT116) 21549442
chr12 53954900 53955903 TCF7L2 GTRD no Colon (HCT116) 108036197
chr12 53955006 53955502 TCF7L2 GTRD no Colon (HCT116) 21549443
chr12 53955006 53955502 TCF7L2 GTRD no Colon (HCT116) 108036198
chr12 53955028 53955486 TCF7L2 GTRD no Colon (HCT116) 21549444
chr12 53955028 53955486 TCF7L2 GTRD no Colon (HCT116) 108036199
chr12 53955050 53955528 TCF7L2 GTRD no Colon (HCT116) 21549445
chr12 53955050 53955528 TCF7L2 GTRD no Colon (HCT116) 108036200
chr12 53955240 53955664 TCF7L2 GTRD no Colon (HCT116) 21549446
chr12 53955240 53955664 TCF7L2 GTRD no Colon (HCT116) 108036201
chr12 53955252 53955736 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036202
chr12 53955263 53955919 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036203
chr12 53955269 53955283 STAT1 JASPAR yes 120990936
chr12 53955269 53955284 STAT2 JASPAR yes 120990937
chr12 53955271 53955292 IRF1 JASPAR yes 120990938
chr12 53955272 53955287 HSF1 JASPAR yes 120990939
chr12 53955273 53955286 HSF4 JASPAR yes 120990940
chr12 53955274 53955288 IRF8 JASPAR yes 120990941
Genes associated with rs368611789[chr12:53955277], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More