EnhancerDB
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  3. rs372886528[chr16:25006462]
Enhancers that have rs372886528[chr16:25006462]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 24992965 25014102 enh3954
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs372886528[chr16:25006462]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 25005141 25007271 ZNF274 GTRD no Bone Marrow (K562) 21699251
chr16 25005141 25007271 ZNF274 GTRD no Bone Marrow (K562) 108189409
chr16 25005307 25007427 TEF1 GTRD no Bone (Osteoblast) 21699254
chr16 25005307 25007427 TEF1 GTRD no Bone (Osteoblast) 108189413
chr16 25005637 25007296 ZNF143 GTRD no Epithelial (MCF-7) 21699285
chr16 25005637 25007296 ZNF143 GTRD no Epithelial (MCF-7) 108189453
chr16 25005667 25007325 ZNF143 GTRD no Epithelial (MCF-7) 21699293
chr16 25005667 25007325 ZNF143 GTRD no Epithelial (MCF-7) 108189462
chr16 25005771 25007289 ZNF143 GTRD no Epithelial (MCF-7) 21699301
chr16 25005771 25007289 ZNF143 GTRD no Epithelial (MCF-7) 108189470
chr16 25005799 25007095 ZNF274 GTRD no Cervix (HeLa-S3) 21699305
chr16 25005799 25007095 ZNF274 GTRD no Cervix (HeLa-S3) 108189475
chr16 25006450 25006468 E2F3 JASPAR yes 10093543
chr16 25006461 25006471 ALX3 JASPAR yes 10093544
chr16 25006461 25006471 GSX2 JASPAR yes 10093545
chr16 25006461 25006471 HOXB2 JASPAR yes 10093546
chr16 25006461 25006471 MNX1 JASPAR yes 10093547
chr16 25006461 25006472 HOXA10 JASPAR yes 10093548
chr16 25006462 25006470 LMX1A JASPAR yes 10093549
chr16 25006462 25006470 LMX1B JASPAR yes 10093550
chr16 25006462 25006470 NKX6-1 JASPAR yes 10093551
chr16 25006462 25006470 NKX6-2 JASPAR yes 10093552
chr16 25006462 25006470 VAX1 JASPAR yes 10093553
chr16 25006462 25006470 VAX2 JASPAR yes 10093554
chr16 25006462 25006470 VSX1 JASPAR yes 10093555
chr16 25006462 25006470 VSX2 JASPAR yes 10093556
chr16 25006462 25006475 DUXA JASPAR yes 10093557
Genes associated with rs372886528[chr16:25006462], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More