EnhancerDB
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  3. rs373998006[chr1:39589389]
Enhancers that have rs373998006[chr1:39589389]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs373998006[chr1:39589389]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39589378 39589399 IRF1 JASPAR yes 28254361
chr1 39589379 39589394 FOXP1 JASPAR yes 28254362
chr1 39589382 39589394 IRF1 JASPAR yes 28254363
chr1 39589383 39589404 IRF1 JASPAR yes 28254364
chr1 39589384 39589390 TCF4 TRANSFAC yes 28254365
chr1 39589384 39589399 FOXP1 JASPAR yes 28254366
chr1 39589384 39589405 IRF1 JASPAR yes 28254367
chr1 39589385 39589396 FOXP2 JASPAR yes 28254368
chr1 39589385 39589397 FOXC2 JASPAR yes 28254369
chr1 39589385 39589400 STAT2 JASPAR yes 28254370
chr1 39589385 39589406 IRF1 JASPAR yes 28254371
chr1 39589386 39589401 FOXP1 JASPAR yes 28254372
chr1 39589386 39589407 IRF1 JASPAR yes 28254373
chr1 39589387 39589408 IRF1 JASPAR yes 28254374
chr1 39589388 39589403 FOXP1 JASPAR yes 28254375
chr1 39589388 39589409 IRF1 JASPAR yes 28254376
chr1 39589389 39589404 FOXP1 JASPAR yes 28254377
chr1 39589389 39589410 IRF1 JASPAR yes 28254378
Genes associated with rs373998006[chr1:39589389], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More