EnhancerDB
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  3. rs3754402[chr1:226876363]
Enhancers that have rs3754402[chr1:226876363]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 226838901 226907579 enh973
Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs3754402[chr1:226876363]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 226873586 226876636 ZNF274 GTRD no Cervix (HeLa-S3) 21387187
chr1 226873586 226876636 ZNF274 GTRD no Cervix (HeLa-S3) 107876176
chr1 226873586 226876636 ZNF274 GTRD no Cervix (HeLa-S3) 107876177
chr1 226873712 226876837 ZNF274 GTRD no Bone Marrow (K562) 107876179
chr1 226873712 226876837 ZNF274 GTRD no Bone Marrow (K562) 107876180
chr1 226873712 226876837 ZNF274 GTRD no Bone Marrow (K562) 107876181
chr1 226875158 226876525 ZNF274 GTRD no Cervix (HeLa-S3) 21387191
chr1 226875158 226876525 ZNF274 GTRD no Cervix (HeLa-S3) 107876188
chr1 226875158 226876525 ZNF274 GTRD no Cervix (HeLa-S3) 107876189
chr1 226875173 226876525 ZNF274 GTRD no Bone Marrow (K562) 107876191
chr1 226875173 226876525 ZNF274 GTRD no Bone Marrow (K562) 107876192
chr1 226875398 226876399 ZNF274 GTRD no Bone Marrow (K562) 107876196
chr1 226875473 226876501 ZNF274 GTRD no Bone Marrow (K562) 107876197
chr1 226875608 226876441 ZNF274 GTRD no Bone Marrow (K562) 107876200
chr1 226875628 226876547 ZNF274 GTRD no Bone Marrow (K562) 107876202
chr1 226875668 226876424 ZNF274 GTRD no Bone Marrow (K562) 107876205
chr1 226875669 226876466 ZNF274 GTRD no Bone Marrow (K562) 107876206
chr1 226875682 226876443 ZNF274 GTRD no Bone Marrow (K562) 107876207
chr1 226875694 226876463 ZNF274 GTRD no Bone Marrow (K562) 107876208
chr1 226875694 226876482 ZNF274 GTRD no Bone Marrow (K562) 107876209
chr1 226875709 226876565 ZBTB33 GTRD no Lung (A549) 107876210
chr1 226875711 226876393 ZNF274 GTRD no Bone Marrow (K562) 107876211
chr1 226875719 226876493 TCF7L2 GTRD no Colon (HCT116) 21387195
chr1 226875719 226876493 TCF7L2 GTRD no Colon (HCT116) 107876212
chr1 226875722 226876493 ZNF274 GTRD no Bone Marrow (K562) 107876213
chr1 226875729 226876424 ZBTB33 GTRD no Lung (A549) 107876214
chr1 226875756 226876537 ZNF274 GTRD no Bone Marrow (K562) 107876215
chr1 226875762 226876381 TCF7L2 GTRD no Colon (HCT116) 21387196
chr1 226875762 226876381 TCF7L2 GTRD no Colon (HCT116) 107876216
chr1 226875846 226876368 ZBTB33 GTRD no Lung (A549) 107876221
chr1 226875850 226876377 ZNF274 GTRD no Bone Marrow (K562) 107876222
chr1 226875884 226876483 ZNF274 GTRD no Bone Marrow (K562) 107876224
chr1 226875896 226876474 ZBTB33 GTRD no Lung (A549) 107876225
chr1 226875910 226876424 ZNF274 GTRD no Bone Marrow (K562) 107876228
chr1 226875910 226876426 ZNF274 GTRD no Bone Marrow (K562) 107876229
chr1 226875920 226876408 ZNF274 GTRD no Bone Marrow (K562) 107876231
chr1 226875925 226876374 TCF7L2 GTRD no Colon (HCT116) 21387203
chr1 226875925 226876374 TCF7L2 GTRD no Colon (HCT116) 107876234
chr1 226875929 226876410 ZNF274 GTRD no Bone Marrow (K562) 107876235
chr1 226875940 226876439 ZNF274 GTRD no Bone Marrow (K562) 107876237
chr1 226875959 226876414 ZNF143 GTRD no Epithelial (MCF-7) 21387205
chr1 226875959 226876414 ZNF143 GTRD no Epithelial (MCF-7) 107876238
chr1 226876000 226876520 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21387206
chr1 226876000 226876520 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107876240
chr1 226876017 226876445 TCF7L2 GTRD no Colon (HCT116) 21387208
chr1 226876017 226876445 TCF7L2 GTRD no Colon (HCT116) 107876242
chr1 226876089 226876413 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21387209
chr1 226876089 226876413 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107876243
chr1 226876132 226876502 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21387210
chr1 226876132 226876502 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107876244
chr1 226876214 226876478 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21387211
chr1 226876214 226876478 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107876245
chr1 226876361 226876376 RFX5 JASPAR yes 35833237
Genes associated with rs3754402[chr1:226876363], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More