EnhancerDB
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  3. rs3754404[chr1:226876490]
Enhancers that have rs3754404[chr1:226876490]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 226838901 226907579 enh973
Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs3754404[chr1:226876490]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 226873586 226876636 ZNF274 GTRD no Cervix (HeLa-S3) 21387187
chr1 226873586 226876636 ZNF274 GTRD no Cervix (HeLa-S3) 107876176
chr1 226873586 226876636 ZNF274 GTRD no Cervix (HeLa-S3) 107876177
chr1 226873712 226876837 ZNF274 GTRD no Bone Marrow (K562) 107876179
chr1 226873712 226876837 ZNF274 GTRD no Bone Marrow (K562) 107876180
chr1 226873712 226876837 ZNF274 GTRD no Bone Marrow (K562) 107876181
chr1 226875158 226876525 ZNF274 GTRD no Cervix (HeLa-S3) 21387191
chr1 226875158 226876525 ZNF274 GTRD no Cervix (HeLa-S3) 107876188
chr1 226875158 226876525 ZNF274 GTRD no Cervix (HeLa-S3) 107876189
chr1 226875173 226876525 ZNF274 GTRD no Bone Marrow (K562) 107876191
chr1 226875173 226876525 ZNF274 GTRD no Bone Marrow (K562) 107876192
chr1 226875473 226876501 ZNF274 GTRD no Bone Marrow (K562) 107876197
chr1 226875628 226876547 ZNF274 GTRD no Bone Marrow (K562) 107876202
chr1 226875709 226876565 ZBTB33 GTRD no Lung (A549) 107876210
chr1 226875719 226876493 TCF7L2 GTRD no Colon (HCT116) 21387195
chr1 226875719 226876493 TCF7L2 GTRD no Colon (HCT116) 107876212
chr1 226875722 226876493 ZNF274 GTRD no Bone Marrow (K562) 107876213
chr1 226875756 226876537 ZNF274 GTRD no Bone Marrow (K562) 107876215
chr1 226876000 226876520 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21387206
chr1 226876000 226876520 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107876240
chr1 226876132 226876502 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21387210
chr1 226876132 226876502 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107876244
chr1 226876485 226876496 BATF JASPAR yes 35833261
chr1 226876489 226876504 PRDM1 JASPAR yes 35833262
Genes associated with rs3754404[chr1:226876490], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More