EnhancerDB
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  3. rs3768402[chr1:226890837]
Enhancers that have rs3768402[chr1:226890837]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 226838901 226907579 enh973
Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs3768402[chr1:226890837]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 226890190 226890868 ZNF274 GTRD no Bone Marrow (K562) 107876271
chr1 226890190 226890868 ZNF274 GTRD no Bone Marrow (K562) 107876272
chr1 226890747 226891187 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21387234
chr1 226890747 226891187 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 107876274
chr1 226890795 226891625 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21387235
chr1 226890795 226891625 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107876275
chr1 226890795 226891803 POLR2A UCSC Txn Factor no Conserved 107876276
chr1 226890832 226891502 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21387236
chr1 226890832 226891502 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107876277
chr1 226890837 226890853 SOX8 JASPAR yes 35835416
Genes associated with rs3768402[chr1:226890837], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More