EnhancerDB
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  3. rs377098640[chr1:209589544]
Enhancers that have rs377098640[chr1:209589544]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 209568193 209597635 enh12617
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Placenta Colon (HCT116) Uterus Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Breast Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
chr1 209589374 209589797 vista4900
VISTA
Transcript factors that have rs377098640[chr1:209589544]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 209589369 209589943 ZBTB33 GTRD no Brain (SK-N-SH) 107865765
chr1 209589423 209589756 ZNF274 GTRD no Cervix (HeLa-S3) 21375372
chr1 209589423 209589756 ZNF274 GTRD no Cervix (HeLa-S3) 107865766
chr1 209589466 209589757 FOS UCSC Txn Factor no Conserved 107865767
chr1 209589537 209589557 TP63 JASPAR yes 34973790
chr1 209589537 209589557 TP63 JASPAR yes 118448276
chr1 209589538 209589547 SNAI2 JASPAR yes 34973791
chr1 209589538 209589547 SNAI2 JASPAR yes 118448277
chr1 209589538 209589548 ID4 JASPAR yes 34973792
chr1 209589538 209589548 NHLH1 JASPAR yes 34973793
chr1 209589538 209589548 TCF3 JASPAR yes 34973794
chr1 209589538 209589548 TCF4 JASPAR yes 34973795
chr1 209589538 209589548 ID4 JASPAR yes 118448278
chr1 209589538 209589548 NHLH1 JASPAR yes 118448279
chr1 209589538 209589548 TCF3 JASPAR yes 118448280
chr1 209589538 209589548 TCF4 JASPAR yes 118448281
chr1 209589538 209589556 TP73 JASPAR yes 34973796
chr1 209589538 209589556 TP73 JASPAR yes 118448282
chr1 209589540 209589549 ZEB1 JASPAR yes 34973797
chr1 209589540 209589549 ZEB1 JASPAR yes 118448283
chr1 209589540 209589555 TP53 JASPAR yes 34973798
chr1 209589540 209589555 TP53 JASPAR yes 118448284
chr1 209589541 209589549 TBX5 JASPAR yes 34973799
chr1 209589541 209589549 TBX5 JASPAR yes 118448285
Genes associated with rs377098640[chr1:209589544], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More