EnhancerDB
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  3. rs3828865[chr6:16684154]
Enhancers that have rs3828865[chr6:16684154]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 16667585 16734115 enh23080
Liver Astrocyte Colon (HCT116) Adrenal Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr6 16684094 16684384 vista51163
VISTA
Transcript factors that have rs3828865[chr6:16684154]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 16683875 16684391 TFAP2C UCSC Txn Factor no Conserved 108538894
chr6 16684063 16684321 CEBPB UCSC Txn Factor no Conserved 108538895
chr6 16684146 16684157 TFAP2A JASPAR yes 70326473
chr6 16684146 16684157 TFAP2A JASPAR yes 100326954
Genes associated with rs3828865[chr6:16684154], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More