EnhancerDB
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  3. rs3835709[chr1:226867641]
Enhancers that have rs3835709[chr1:226867641]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 226838901 226907579 enh973
Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 226867580 226868182 vista5374
VISTA
Transcript factors that have rs3835709[chr1:226867641]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 226867462 226868132 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21387054
chr1 226867462 226868132 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107875923
chr1 226867533 226868033 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21387055
chr1 226867533 226868033 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107875924
chr1 226867550 226867920 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21387056
chr1 226867550 226867920 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107875925
chr1 226867554 226868238 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21387057
chr1 226867554 226868238 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107875926
chr1 226867560 226867772 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21387058
chr1 226867560 226867772 SPI1 UCSC Txn Factor no Conserved 107875927
chr1 226867560 226867772 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107875928
chr1 226867581 226867750 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107875929
chr1 226867585 226868075 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21387059
chr1 226867585 226868075 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107875930
chr1 226867605 226867981 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21387060
chr1 226867605 226867981 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107875931
chr1 226867637 226867642 SP1 TRANSFAC yes 35831996
chr1 226867637 226867642 SP1 TRANSFAC yes 118471995
Genes associated with rs3835709[chr1:226867641], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More