EnhancerDB
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  3. rs3883879[chr5:173189926]
Enhancers that have rs3883879[chr5:173189926]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 173178093 173268555 enh8886
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr5 173189921 173190166 vista50229
VISTA
Transcript factors that have rs3883879[chr5:173189926]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 173189917 173189932 MEF2C JASPAR yes 67901780
chr5 173189917 173189932 MEF2C JASPAR yes 70766583
chr5 173189923 173189938 HNF1A JASPAR yes 67901781
chr5 173189923 173189938 HNF1A JASPAR yes 70766584
chr5 173189924 173189937 HNF1B JASPAR yes 67901782
chr5 173189924 173189937 HNF1B JASPAR yes 70766585
Genes associated with rs3883879[chr5:173189926], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More