EnhancerDB
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  3. rs3936143[chr1:173378918]
Enhancers that have rs3936143[chr1:173378918]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 173367664 173402717 enh734
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Muscle (A673)
Transcript factors that have rs3936143[chr1:173378918]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 173378641 173379028 SOX2 GTRD no Neural Stem Cells (H9) 21351273
chr1 173378661 173379041 SOX2 GTRD no Neural Stem Cells (H9) 21351274
chr1 173378686 173379130 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21351275
chr1 173378707 173379036 SOX2 GTRD no Neural Stem Cells (H9) 21351276
chr1 173378734 173379090 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21351277
chr1 173378811 173379015 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21351278
Genes associated with rs3936143[chr1:173378918], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More