EnhancerDB
  1. Home
  2. SNP
  3. rs397689525[chr2:38672220]
Enhancers that have rs397689525[chr2:38672220]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 38653105 38683515 enh33236
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Stomach Colon (HCT116) Breast Uterus Thyroid Lung (PC-9) Pancreas Muscle (Myotube) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs397689525[chr2:38672220]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 38672210 38672225 FOXA1 JASPAR yes 73141675
chr2 38672211 38672223 FOXI1 JASPAR yes 73141676
chr2 38672211 38672226 FOXP1 JASPAR yes 73141677
chr2 38672212 38672224 FOXC2 JASPAR yes 73141678
chr2 38672212 38672226 ONECUT2 JASPAR yes 73141679
chr2 38672212 38672226 ONECUT3 JASPAR yes 73141680
chr2 38672213 38672224 FOXB1 JASPAR yes 73141681
chr2 38672213 38672224 FOXC1 JASPAR yes 73141682
chr2 38672215 38672230 FOXP1 JASPAR yes 73141684
chr2 38672216 38672228 FOXC2 JASPAR yes 73141685
chr2 38672218 38672222 YY1 TRANSFAC yes 73141686
Genes associated with rs397689525[chr2:38672220], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More