EnhancerDB
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  3. rs397802421[chr1:39618529]
Enhancers that have rs397802421[chr1:39618529]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs397802421[chr1:39618529]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39618519 39618530 PHOX2A JASPAR yes 28259262
chr1 39618519 39618530 PROP1 JASPAR yes 28259263
chr1 39618524 39618545 IRF1 JASPAR yes 28259264
chr1 39618525 39618546 IRF1 JASPAR yes 28259265
chr1 39618526 39618541 FOXP1 JASPAR yes 28259266
chr1 39618528 39618534 TBP TRANSFAC yes 28259267
Genes associated with rs397802421[chr1:39618529], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More