EnhancerDB
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  3. rs397858304[chr18:55929863]
Enhancers that have rs397858304[chr18:55929863]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr18 55922865 55949275 enh17739
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung Stomach Muscle (A673) Placenta Thyroid Uterus Peripheral Blood (MM.1S) Pancreas Neural Stem Cells (H9) Heart
Transcript factors that have rs397858304[chr18:55929863]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr18 55929590 55929971 SOX2 GTRD no Neural Stem Cells (H9) 21824092
chr18 55929590 55929971 SOX2 GTRD no Neural Stem Cells (H9) 108338254
chr18 55929857 55929872 FOXP1 JASPAR yes 110933493
chr18 55929861 55929876 FOXP1 JASPAR yes 110933494
chr18 55929862 55929877 FOXP1 JASPAR yes 110933495
chr18 55929862 55929883 IRF1 JASPAR yes 110933496
chr18 55929863 55929878 FOXP1 JASPAR yes 110933497
chr18 55929863 55929884 IRF1 JASPAR yes 110933498
Genes associated with rs397858304[chr18:55929863], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More