EnhancerDB
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  3. rs397860726[chr1:27749643]
Enhancers that have rs397860726[chr1:27749643]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27742945 27784244 enh174
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs397860726[chr1:27749643]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27749640 27749655 FOXP1 JASPAR yes 27692033
chr1 27749641 27749656 FOXP1 JASPAR yes 27692034
chr1 27749642 27749657 FOXP1 JASPAR yes 27692035
chr1 27749642 27749663 IRF1 JASPAR yes 27692036
chr1 27749643 27749658 FOXP1 JASPAR yes 27692037
chr1 27749643 27749664 IRF1 JASPAR yes 27692038
Genes associated with rs397860726[chr1:27749643], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More