EnhancerDB
  1. Home
  2. SNP
  3. rs397979447[chr1:19771860]
Enhancers that have rs397979447[chr1:19771860]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs397979447[chr1:19771860]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19771854 19771875 IRF1 JASPAR yes 27191223
chr1 19771856 19771871 PRDM1 JASPAR yes 27191224
chr1 19771856 19771871 STAT2 JASPAR yes 27191225
chr1 19771859 19771874 FOXP1 JASPAR yes 27191226
chr1 19771860 19771875 FOXP1 JASPAR yes 27191227
Genes associated with rs397979447[chr1:19771860], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More