EnhancerDB
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  3. rs397979930[chr1:39650963]
Enhancers that have rs397979930[chr1:39650963]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39647111 39665522 enh11761
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs397979930[chr1:39650963]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39650960 39650975 FOXP1 JASPAR yes 28263946
chr1 39650961 39650976 FOXP1 JASPAR yes 28263947
chr1 39650962 39650977 FOXP1 JASPAR yes 28263948
chr1 39650962 39650983 IRF1 JASPAR yes 28263949
chr1 39650963 39650978 FOXP1 JASPAR yes 28263950
Genes associated with rs397979930[chr1:39650963], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More