EnhancerDB
  1. Home
  2. SNP
  3. rs398000456[chr6:11221615]
Enhancers that have rs398000456[chr6:11221615]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 11200230 11227635 enh23016
Brain (SK-N-MC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs398000456[chr6:11221615]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 11221608 11221619 CDX2 JASPAR yes 99866085
chr6 11221609 11221620 HOXA10 JASPAR yes 99866086
chr6 11221609 11221620 HOXC11 JASPAR yes 99866087
chr6 11221609 11221620 HOXC12 JASPAR yes 99866088
chr6 11221609 11221620 HOXC13 JASPAR yes 99866089
chr6 11221609 11221620 HOXD12 JASPAR yes 99866090
chr6 11221610 11221619 CDX1 JASPAR yes 99866091
chr6 11221610 11221620 HOXA13 JASPAR yes 99866092
chr6 11221610 11221620 HOXC10 JASPAR yes 99866093
chr6 11221610 11221620 HOXD11 JASPAR yes 99866094
chr6 11221610 11221620 HOXD13 JASPAR yes 99866095
chr6 11221612 11221627 FOXP1 JASPAR yes 99866096
chr6 11221613 11221628 FOXP1 JASPAR yes 99866097
chr6 11221613 11221634 IRF1 JASPAR yes 99866098
chr6 11221614 11221620 TBP TRANSFAC yes 99866099
chr6 11221614 11221629 FOXP1 JASPAR yes 99866100
Genes associated with rs398000456[chr6:11221615], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More