EnhancerDB
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  3. rs398002194[chr6:88439103]
Enhancers that have rs398002194[chr6:88439103]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 88422133 88444375 enh23401
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Heart
Transcript factors that have rs398002194[chr6:88439103]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 88439090 88439105 FOXP1 JASPAR yes 103325938
chr6 88439091 88439112 IRF1 JASPAR yes 103325940
chr6 88439092 88439113 IRF1 JASPAR yes 103325941
chr6 88439097 88439117 RREB1 JASPAR yes 103325942
chr6 88439097 88439118 IRF1 JASPAR yes 103325943
chr6 88439098 88439104 TCF4 TRANSFAC yes 103325944
chr6 88439098 88439113 FOXP1 JASPAR yes 103325945
chr6 88439099 88439110 FOXP2 JASPAR yes 103325946
chr6 88439099 88439111 FOXC2 JASPAR yes 103325947
chr6 88439100 88439115 FOXP1 JASPAR yes 103325948
chr6 88439102 88439122 RREB1 JASPAR yes 103325949
chr6 88439102 88439123 IRF1 JASPAR yes 103325950
Genes associated with rs398002194[chr6:88439103], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More