EnhancerDB
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  3. rs4259997[chr15:67153310]
Enhancers that have rs4259997[chr15:67153310]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr15 67152440 67182466 enh3668
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs4259997[chr15:67153310]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr15 67152948 67153491 SOX2 GTRD no Neural Stem Cells (H9) 21661472
chr15 67153055 67153459 SOX2 GTRD no Neural Stem Cells (H9) 21661473
chr15 67153061 67153384 SOX2 GTRD no Neural Stem Cells (H9) 21661474
chr15 67153128 67153346 SOX2 GTRD no Neural Stem Cells (H9) 21661475
chr15 67153169 67153670 TCF7L2 GTRD no Colon (HCT116) 21661476
chr15 67153297 67153312 RFX5 JASPAR yes 24182232
chr15 67153308 67153314 YY1 JASPAR yes 24182233
Genes associated with rs4259997[chr15:67153310], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More