EnhancerDB
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  3. rs454192[chr17:42171206]
Enhancers that have rs454192[chr17:42171206]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 42170662 42193575 enh17179
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs454192[chr17:42171206]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 42171203 42171212 THAP1 JASPAR yes 54386058
chr17 42171205 42171226 ZNF263 JASPAR yes 54386059
chr17 42171206 42171210 LFA1 TRANSFAC yes 54386060
Genes associated with rs454192[chr17:42171206], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr17 41196312 41277500 - BRCA1 ENSG00000012048.15 41277500 893706 Adrenal 0.33669 15893