EnhancerDB
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  3. rs4550484[chr17:2752965]
Enhancers that have rs4550484[chr17:2752965]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 2744850 2808324 enh4213
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Neural Stem Cells (H9) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs4550484[chr17:2752965]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 2752953 2752965 PKNOX1 JASPAR yes 52777054
chr17 2752953 2752965 PKNOX2 JASPAR yes 52777055
chr17 2752953 2752965 TGIF2 JASPAR yes 52777056
chr17 2752964 2752968 LFA1 TRANSFAC yes 52777058
chr17 2752964 2752979 AR JASPAR yes 52777059
chr17 2752964 2752979 HNF4A JASPAR yes 52777060
chr17 2752965 2752980 HNF4G JASPAR yes 52777061
chr17 2752965 2752980 LEF1 JASPAR yes 52777062
Genes associated with rs4550484[chr17:2752965], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More