EnhancerDB
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  3. rs4601580[chr1:154394417]
Enhancers that have rs4601580[chr1:154394417]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 154376585 154406743 enh12276
Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs4601580[chr1:154394417]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 154394401 154394422 IRF1 JASPAR yes 32290789
chr1 154394406 154394421 FOXP1 JASPAR yes 32290790
chr1 154394413 154394424 HOXA10 JASPAR yes 32290791
chr1 154394413 154394428 HNF1A JASPAR yes 32290792
chr1 154394414 154394424 GSX2 JASPAR yes 32290793
chr1 154394414 154394424 HOXB2 JASPAR yes 32290794
chr1 154394414 154394424 HOXB3 JASPAR yes 32290795
chr1 154394414 154394424 MNX1 JASPAR yes 32290796
chr1 154394414 154394424 POU6F1 JASPAR yes 32290797
chr1 154394414 154394427 HNF1B JASPAR yes 32290798
chr1 154394415 154394423 LMX1A JASPAR yes 32290799
chr1 154394415 154394423 LMX1B JASPAR yes 32290800
chr1 154394415 154394423 NKX6-1 JASPAR yes 32290801
chr1 154394415 154394423 NKX6-2 JASPAR yes 32290802
chr1 154394415 154394423 VAX1 JASPAR yes 32290803
chr1 154394415 154394423 VAX2 JASPAR yes 32290804
chr1 154394415 154394423 VSX1 JASPAR yes 32290805
chr1 154394415 154394423 VSX2 JASPAR yes 32290806
Genes associated with rs4601580[chr1:154394417], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 154377669 154441926 + IL6R ENSG00000160712.8 154377669 0 Heart 0.0933593 1300