EnhancerDB
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  3. rs4912090[chr1:19749402]
Enhancers that have rs4912090[chr1:19749402]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19747725 19800935 enh99
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs4912090[chr1:19749402]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19749396 19749406 GSC2 JASPAR yes 27188091
chr1 19749396 19749406 GSC JASPAR yes 27188092
chr1 19749397 19749405 OTX1 JASPAR yes 27188093
chr1 19749397 19749405 OTX2 JASPAR yes 27188094
chr1 19749397 19749405 RHOXF1 JASPAR yes 27188095
chr1 19749397 19749406 PITX3 JASPAR yes 27188096
chr1 19749401 19749409 LBX1 JASPAR yes 27188097
chr1 19749402 19749405 MYB TRANSFAC yes 27188098
Genes associated with rs4912090[chr1:19749402], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More