EnhancerDB
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  3. rs530407403[chr1:234861001]
Enhancers that have rs530407403[chr1:234861001]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 234827105 234875936 enh12795
Bone Marrow (K562) Liver Astrocyte Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs530407403[chr1:234861001]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 234858649 234861065 POLR2A UCSC Txn Factor no Conserved 107881600
chr1 234860784 234861280 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21396655
chr1 234860843 234861373 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21396656
chr1 234860848 234861364 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21396657
chr1 234860865 234861193 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21396658
chr1 234860942 234861378 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21396661
chr1 234860942 234861580 ZNF274 GTRD no Bone Marrow (K562) 21396662
chr1 234860946 234861226 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21396663
chr1 234860979 234861313 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21396664
chr1 234861000 234861014 TCF7L2 JASPAR yes 36307835
chr1 234861000 234861015 LEF1 JASPAR yes 36307836
Genes associated with rs530407403[chr1:234861001], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More