EnhancerDB
  1. Home
  2. SNP
  3. rs530489247[chr1:39610254]
Enhancers that have rs530489247[chr1:39610254]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs530489247[chr1:39610254]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39610242 39610256 GLIS3 JASPAR yes 28257699
chr1 39610243 39610254 TBX20 JASPAR yes 28257700
chr1 39610251 39610259 TBX15 JASPAR yes 28257703
chr1 39610251 39610259 TBX1 JASPAR yes 28257704
chr1 39610251 39610259 TBX4 JASPAR yes 28257705
chr1 39610251 39610259 TBX5 JASPAR yes 28257706
chr1 39610251 39610264 SMAD2 JASPAR yes 28257707
Genes associated with rs530489247[chr1:39610254], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More