EnhancerDB
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  3. rs530709880[chr17:2779238]
Enhancers that have rs530709880[chr17:2779238]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 2744850 2808324 enh4213
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Neural Stem Cells (H9) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs530709880[chr17:2779238]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 2779218 2779238 RREB1 JASPAR yes 52780906
chr17 2779221 2779241 RREB1 JASPAR yes 52780910
chr17 2779222 2779242 RREB1 JASPAR yes 52780911
chr17 2779226 2779246 RREB1 JASPAR yes 52780913
chr17 2779228 2779243 FOXA1 JASPAR yes 52780914
chr17 2779229 2779241 FOXI1 JASPAR yes 52780915
chr17 2779229 2779244 FOXP1 JASPAR yes 52780916
chr17 2779230 2779242 FOXC2 JASPAR yes 52780917
chr17 2779232 2779243 FOXA1 JASPAR yes 52780918
chr17 2779233 2779248 FOXP1 JASPAR yes 52780919
chr17 2779234 2779245 FOXP2 JASPAR yes 52780920
chr17 2779234 2779246 FOXC2 JASPAR yes 52780921
chr17 2779234 2779249 STAT2 JASPAR yes 52780922
chr17 2779235 2779250 FOXP1 JASPAR yes 52780923
Genes associated with rs530709880[chr17:2779238], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More