EnhancerDB
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  3. rs531868902[chr18:55948997]
Enhancers that have rs531868902[chr18:55948997]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr18 55922865 55949275 enh17739
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung Stomach Muscle (A673) Placenta Thyroid Uterus Peripheral Blood (MM.1S) Pancreas Neural Stem Cells (H9) Heart
Transcript factors that have rs531868902[chr18:55948997]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr18 55948986 55948999 SMAD2 JASPAR yes 110936350
chr18 55948989 55948999 TBR1 JASPAR yes 110936351
chr18 55948990 55949000 TBX21 JASPAR yes 110936352
chr18 55948991 55948999 MGA JASPAR yes 110936353
chr18 55948991 55948999 TBX15 JASPAR yes 110936354
chr18 55948991 55948999 TBX1 JASPAR yes 110936355
chr18 55948991 55948999 TBX4 JASPAR yes 110936356
chr18 55948991 55948999 TBX5 JASPAR yes 110936357
chr18 55948991 55949000 ZEB1 JASPAR yes 110936358
chr18 55948991 55949003 PKNOX1 JASPAR yes 110936359
chr18 55948991 55949003 PKNOX2 JASPAR yes 110936360
chr18 55948991 55949003 TGIF1 JASPAR yes 110936361
chr18 55948992 55949002 FIGLA JASPAR yes 110936362
chr18 55948992 55949002 ID4 JASPAR yes 110936363
chr18 55948992 55949002 TCF3 JASPAR yes 110936364
chr18 55948992 55949002 TCF4 JASPAR yes 110936365
chr18 55948993 55949002 SNAI2 JASPAR yes 110936366
chr18 55948994 55948999 USF2 TRANSFAC yes 110936367
Genes associated with rs531868902[chr18:55948997], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More