EnhancerDB
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  3. rs533155840[chr6:88435262]
Enhancers that have rs533155840[chr6:88435262]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 88422133 88444375 enh23401
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Heart
chr6 88435204 88435416 vista52702
VISTA
Transcript factors that have rs533155840[chr6:88435262]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 88435036 88435400 TEAD4 UCSC Txn Factor no Conserved 108540933
chr6 88435069 88435532 RUNX3 UCSC Txn Factor no Conserved 108540934
chr6 88435250 88435262 MEF2D JASPAR yes 70397734
chr6 88435250 88435262 MEF2D JASPAR yes 103325320
chr6 88435259 88435274 STAT2 JASPAR yes 70397736
chr6 88435259 88435274 STAT2 JASPAR yes 103325322
chr6 88435260 88435274 SPI1 JASPAR yes 70397737
chr6 88435260 88435274 SPI1 JASPAR yes 103325323
chr6 88435262 88435578 EBF1 UCSC Txn Factor no Conserved 108540935
Genes associated with rs533155840[chr6:88435262], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More