EnhancerDB
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  3. rs533943439[chr6:44007366]
Enhancers that have rs533943439[chr6:44007366]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 43975688 44057369 enh9138
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs533943439[chr6:44007366]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 44007359 44007374 TFAP2C JASPAR yes 101816218
chr6 44007360 44007371 TFAP2A JASPAR yes 101816219
chr6 44007360 44007371 TFAP2B JASPAR yes 101816220
chr6 44007360 44007371 TFAP2C JASPAR yes 101816221
chr6 44007361 44007370 TFAP2A JASPAR yes 101816222
chr6 44007366 44007370 LFA1 TRANSFAC yes 101816223
Genes associated with rs533943439[chr6:44007366], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More