EnhancerDB
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  3. rs534054473[chr17:57827429]
Enhancers that have rs534054473[chr17:57827429]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 57820705 57849586 enh4505
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs534054473[chr17:57827429]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 57827422 57827432 HOXA13 JASPAR yes 55076728
chr17 57827422 57827432 HOXB13 JASPAR yes 55076729
chr17 57827422 57827432 HOXD13 JASPAR yes 55076730
chr17 57827422 57827433 HOXA10 JASPAR yes 55076731
chr17 57827423 57827432 CDX1 JASPAR yes 55076732
chr17 57827423 57827434 CDX2 JASPAR yes 55076733
chr17 57827428 57827434 NFIC JASPAR yes 55076734
Genes associated with rs534054473[chr17:57827429], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More