EnhancerDB
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  3. rs534249291[chr12:122593440]
Enhancers that have rs534249291[chr12:122593440]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 122578829 122604895 enh2657
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs534249291[chr12:122593440]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 122593426 122593447 IRF1 JASPAR yes 124266955
chr12 122593430 122593444 STAT1 JASPAR yes 124266956
chr12 122593430 122593445 PRDM1 JASPAR yes 124266957
chr12 122593430 122593445 STAT2 JASPAR yes 124266958
chr12 122593432 122593453 IRF1 JASPAR yes 124266959
chr12 122593435 122593441 TCF4 TRANSFAC yes 124266960
chr12 122593436 122593451 PRDM1 JASPAR yes 124266961
chr12 122593439 122593452 SMAD2 JASPAR yes 124266962
Genes associated with rs534249291[chr12:122593440], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More