EnhancerDB
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  3. rs534301125[chr2:232479930]
Enhancers that have rs534301125[chr2:232479930]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 232460065 232495135 enh6201
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs534301125[chr2:232479930]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 232476928 232480423 POLR2A UCSC Txn Factor no Conserved 108435689
chr2 232476928 232480423 POLR2A UCSC Txn Factor no Conserved 108435690
chr2 232476928 232480423 POLR2A UCSC Txn Factor no Conserved 108435691
chr2 232479923 232479935 TFAP2A JASPAR yes 81726266
chr2 232479923 232479935 TFAP2B JASPAR yes 81726267
chr2 232479924 232479933 TFAP2A JASPAR yes 81726268
chr2 232479928 232479939 NFKB1 JASPAR yes 81726269
chr2 232479929 232479934 SP1 TRANSFAC yes 81726270
Genes associated with rs534301125[chr2:232479930], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More