EnhancerDB
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  3. rs534460428[chr1:90374703]
Enhancers that have rs534460428[chr1:90374703]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 90347765 90388035 enh484
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 90374317 90375036 vista2407
VISTA
Transcript factors that have rs534460428[chr1:90374703]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 90374334 90374985 POLR2A UCSC Txn Factor no Conserved 107813845
chr1 90374437 90375087 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813846
chr1 90374457 90375007 GATA2 UCSC Txn Factor no Conserved 107813848
chr1 90374457 90375007 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107813849
chr1 90374507 90374843 POL24H8 ENCODE Uniform TFBS no Brain (SK-N-MC) 107813850
chr1 90374532 90374988 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107813851
chr1 90374560 90375100 EP300 UCSC Txn Factor no Conserved 107813852
chr1 90374560 90375100 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107813853
chr1 90374573 90375089 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813854
chr1 90374577 90375107 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813855
chr1 90374627 90374923 POL24H8 ENCODE Uniform TFBS no Brain (SK-N-MC) 107813856
chr1 90374630 90374960 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813857
chr1 90374636 90374896 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813858
chr1 90374638 90374985 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 107813859
chr1 90374647 90374991 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813860
chr1 90374652 90374908 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107813861
chr1 90374658 90374988 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813862
chr1 90374659 90374979 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813863
chr1 90374667 90374943 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107813864
chr1 90374684 90374959 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813865
chr1 90374684 90374960 CEBPB UCSC Txn Factor no Conserved 107813866
chr1 90374684 90375024 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107813867
chr1 90374687 90374705 SRF JASPAR yes 30633233
chr1 90374687 90374705 SRF JASPAR yes 118326364
chr1 90374689 90374945 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107813868
chr1 90374695 90374951 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107813869
Genes associated with rs534460428[chr1:90374703], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More