EnhancerDB
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  3. rs534550020[chr17:43375082]
Enhancers that have rs534550020[chr17:43375082]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 43363305 43400878 enh4428
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs534550020[chr17:43375082]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 43375076 43375097 IRF1 JASPAR yes 54440907
chr17 43375078 43375099 IRF1 JASPAR yes 54440908
chr17 43375079 43375094 FOXP1 JASPAR yes 54440909
chr17 43375079 43375100 IRF1 JASPAR yes 54440910
chr17 43375080 43375101 IRF1 JASPAR yes 54440911
chr17 43375081 43375096 FOXP1 JASPAR yes 54440912
chr17 43375081 43375102 IRF1 JASPAR yes 54440913
chr17 43375082 43375097 FOXP1 JASPAR yes 54440914
chr17 43375082 43375103 IRF1 JASPAR yes 54440915
Genes associated with rs534550020[chr17:43375082], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More