EnhancerDB
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Enhancers that have rs534594015[chr12:53955394]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 53952154 53966435 enh2368
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Colon (HCT116) Uterus Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Heart
Transcript factors that have rs534594015[chr12:53955394]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 53954615 53955949 TCF7L2 GTRD no Colon (HCT116) 21549439
chr12 53954615 53955949 TCF7L2 GTRD no Colon (HCT116) 108036194
chr12 53954676 53955824 ZNF143 GTRD no Epithelial (MCF-7) 21549440
chr12 53954676 53955824 ZNF143 GTRD no Epithelial (MCF-7) 108036195
chr12 53954690 53955642 ZNF143 GTRD no Epithelial (MCF-7) 21549441
chr12 53954690 53955642 ZNF143 GTRD no Epithelial (MCF-7) 108036196
chr12 53954900 53955903 TCF7L2 GTRD no Colon (HCT116) 21549442
chr12 53954900 53955903 TCF7L2 GTRD no Colon (HCT116) 108036197
chr12 53955006 53955502 TCF7L2 GTRD no Colon (HCT116) 21549443
chr12 53955006 53955502 TCF7L2 GTRD no Colon (HCT116) 108036198
chr12 53955028 53955486 TCF7L2 GTRD no Colon (HCT116) 21549444
chr12 53955028 53955486 TCF7L2 GTRD no Colon (HCT116) 108036199
chr12 53955050 53955528 TCF7L2 GTRD no Colon (HCT116) 21549445
chr12 53955050 53955528 TCF7L2 GTRD no Colon (HCT116) 108036200
chr12 53955240 53955664 TCF7L2 GTRD no Colon (HCT116) 21549446
chr12 53955240 53955664 TCF7L2 GTRD no Colon (HCT116) 108036201
chr12 53955252 53955736 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036202
chr12 53955263 53955919 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036203
chr12 53955283 53955823 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036204
chr12 53955285 53955881 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21549447
chr12 53955285 53955881 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 108036205
chr12 53955289 53955865 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036206
chr12 53955312 53955816 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036207
chr12 53955316 53955856 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036208
chr12 53955327 53955847 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036209
chr12 53955328 53955812 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036210
chr12 53955335 53955679 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549448
chr12 53955335 53955679 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036211
chr12 53955361 53955737 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549449
chr12 53955361 53955737 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036212
chr12 53955367 53955750 FOSL2 UCSC Txn Factor no Conserved 108036213
chr12 53955367 53955750 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036214
chr12 53955373 53955394 ZNF263 JASPAR yes 120990954
chr12 53955377 53955398 ZNF263 JASPAR yes 120990955
chr12 53955378 53955668 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21549450
chr12 53955378 53955668 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108036215
chr12 53955378 53955736 JUN UCSC Txn Factor no Conserved 108036216
chr12 53955379 53955709 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549451
chr12 53955379 53955709 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036217
chr12 53955380 53955401 ZNF263 JASPAR yes 120990956
chr12 53955383 53955404 ZNF263 JASPAR yes 120990957
chr12 53955387 53955395 EHF JASPAR yes 120990959
chr12 53955392 53955402 GSC2 JASPAR yes 120990960
chr12 53955392 53955402 GSC JASPAR yes 120990961
chr12 53955393 53955401 OTX1 JASPAR yes 120990962
chr12 53955393 53955401 OTX2 JASPAR yes 120990963
chr12 53955393 53955401 RHOXF1 JASPAR yes 120990964
chr12 53955393 53955402 PITX3 JASPAR yes 120990965
Genes associated with rs534594015[chr12:53955394], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More