EnhancerDB
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  3. rs534805502[chr1:54778693]
Enhancers that have rs534805502[chr1:54778693]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 54761072 54782679 enh11866
Liver (HepG2) Brain (SK-N-SH) Large Intestine Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Thyroid Uterus Embryonic Stem Cell Line (H1-hESC) Pancreas Spleen Muscle (Myotube) Neural Stem Cells (H9) Thymus Heart
chr1 54778588 54778715 vista1649
VISTA
Transcript factors that have rs534805502[chr1:54778693]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 54778224 54779072 ZNF143 GTRD no Epithelial (MCF-7) 107804771
chr1 54778525 54779004 ZNF274 GTRD no Blood (GM12878) 107804772
chr1 54778532 54778796 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804773
chr1 54778532 54778830 USF1 UCSC Txn Factor no Conserved 107804774
chr1 54778553 54778793 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107804775
chr1 54778570 54778770 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107804776
chr1 54778660 54778759 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107804777
chr1 54778682 54778697 TFAP2C JASPAR yes 28972104
chr1 54778682 54778697 TFAP2C JASPAR yes 118292469
chr1 54778687 54778708 IRF1 JASPAR yes 28972105
chr1 54778687 54778708 IRF1 JASPAR yes 118292470
chr1 54778690 54778711 IRF1 JASPAR yes 28972106
chr1 54778690 54778711 IRF1 JASPAR yes 118292471
chr1 54778691 54778712 IRF1 JASPAR yes 28972107
chr1 54778691 54778712 IRF1 JASPAR yes 118292472
chr1 54778692 54778707 FOXP1 JASPAR yes 28972108
chr1 54778692 54778707 FOXP1 JASPAR yes 118292473
chr1 54778692 54778713 IRF1 JASPAR yes 28972109
chr1 54778692 54778713 IRF1 JASPAR yes 118292474
chr1 54778693 54778708 FOXP1 JASPAR yes 28972110
chr1 54778693 54778708 FOXP1 JASPAR yes 118292475
chr1 54778693 54778714 IRF1 JASPAR yes 28972111
chr1 54778693 54778714 IRF1 JASPAR yes 118292476
Genes associated with rs534805502[chr1:54778693], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More